• Microarray Database
• Data Analysis Tools And Techniques

Statistical Analysis of Gene Expression Microarray Data promises to become the definitive basic reference in the field. Under the editorship of Terry Speed, some of the world's most pre-eminent authorities have joined forces to present the tools, features, and problems associated with the analysis of genetic microarray data. These include:. Image analysis software for Microarray: Image Analysis: Win: open in new window Affymetix software: Affymetrix free toold for data analysis, mining, and management: Data Analysis: Win/Mac: open in new window Affymetix Expression Console: Affymetrix Expression Console Software supports probe set summarization and CHP file generation for 3' IVT. Gene expression microarray data analysis software tools. Gene expression microarray (or DNA microarray) is a very powerful high-throughput tool capable of monitoring the expression of thousands of genes in an organism simultaneously. The power of these tools has been applied to a range of applications, including discovering novel disease.

Microarray Database

• The data were analyzed using GenePix® Pro 6 Microarray Acquisition and Analysis Software (Molecular Devices) and normalized with the MIDAS v2.2: Microarray Data Analysis System (TIGR's Microarray Data Analysis System). Normalization was necessary to compensate for variability between slides and fluorescent dyes.
• Microarray analysis software has been developed under the R System, which is freely available for Linux, Windows and Mac OSX. See other software, data and related links at GEDA. Adaptive Gene Picking for Microarray Expression Data Analysis ( pickgene package for analysis used in Lin et al. (2003)): now available directly from BioConductor.

• Ginkgo is a spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data. This application provides a user-friendly graphical interface that allows viewing, analyzing, generating and reporting microarray data, easily and intuitively. Within the software there are a number of algorithms to address microarray data analysis needs, including normalization, filtering, data imputation, replicates .

  • File Name:ginkgo_1.0.1.zip
  • Author:J. Craig Venter Institute

  • License:Shareware ($)
  • File Size:10.84 Mb

  • Runs on:Win All

• Microarray Explorer (MAExplorer) is a Java-based. It finds differentially expressed genes on microarray experiments. Implemented in Java, it is based on the work of Tusher, and Tibshirani, published on the PNAS Journal. ...

  • File Name:SAM Significance Analysis ofMicroarray
  • Author:Tiago Lopes

  • License:Freeware (Free)
  • File Size:

  • Runs on:Windows

• BIRBU (BIological Relationship BUilder) is a Java tool for microarray gene expression dataanalysis. BIRBU identifies biologically significant relationship between genes using microarraydata and prior knowledge on relationships between genes.

  • File Name:Biological RelationshipBuilder
  • Author:Biomeche, Jeffrey Blanchard,Volker Grabe

  • License:Freeware (Free)
  • File Size:

  • Runs on:Windows

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Data Analysis Tools And Techniques